Bao Lab         

Gene Regulation of Stem Cell Maintenance and Differentiation 

Email: xbchromatin@gmail.com

 

Lab Meeting / Journal Club schedule  --- virtual meetings, until further notice



Lab Meetings and Journal Clubs Spring Quarter 2021. 9am Every other Monday unless otherwise specified

                Lab meeting Presenter                            

4/19                      Patric                                    

5/3.                       Amy                                                      

5/17                      Sarah                                                                

5/31*                     Stephenie  
(Presenter can choose 6/1, 5/24, or 6/7 as an alternative)                                                                

6/14                      Mari                                      


6/28                     Patric            



Recommended papers:

1. https://www.nature.com/articles/s41586-020-2023-4

This paper from the ENCODE project reports the occupancy of 208 chromatin-associated proteins in one cell type, including GATAD2A, ATF3, CHD4, HDAC1, HDAC2, MYC, Pol II… 

2. https://www.nature.com/articles/s41586-020-2695-9

This paper from Elaine Fuchs group describes how stiffness impacts BCC and SCC 

3. https://www.nature.com/articles/s41467-020-18075-7

This paper reported single-cell RNA-seq from human neonatal epidermis, and identified different subgroups in the basal progenitor layer. 

4. https://www.nature.com/articles/s41556-021-00653-6

EZH2, generally recognized as a histone methyltransferase, plays a on in the nucleolus. 

5. https://www.sciencedirect.com/science/article/pii/S1097276521000137?via%3Dihub

A transcription factor can exist in different states within the nucleus. Only a subset (even for histone) binds to chromatin. 

6. https://www.sciencedirect.com/science/article/pii/S1097276521001751

This paper, coauthored by John Lis, reports that stress can be “remembered” after cell division, through transcription elongation/termination controls. 

7. https://www.sciencedirect.com/science/article/pii/S1097276521001763

Enhancers are involved in Pol pause release

8. https://www.nature.com/articles/s41586-021-03222-x

A new method of probing RNA-protein interaction 

9. https://www.nature.com/articles/s41588-021-00828-9

Intron retention and blood disorders


10. https://www.nature.com/articles/s41587-020-00794-3

Super-resolution imaging of RNA in both live and fixed cells

11. https://www.biorxiv.org/content/10.1101/2021.01.07.425777v1.full.pdf

A recent paper from the Greco paper showing KC differentiation is decoupled from cell-cycle exit

12. https://www.cell.com/molecular-cell/fulltext/S1097-2765(21)00097-6

GOLD FISH: leverage Cas9 for Genomic DNA in situ hybridization